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5 Days in Japan: Itinerary from Tokyo to Kyoto, Nara Deer and IC Cards

Halfway through the trip, you step out of the Shinkansen at Kyoto Station and the smell of broth drifts down from the floor of ramen counters upstairs, while the city of temples and wooden townhouses waits outside. Behind you are the crossings and glass towers of Tokyo, ahead are the lanes of Gion and a park full of deer. This is a five-day route for a first visit, running from Tokyo to Kyoto and out to Nara.

Classic Japan
Classic Japan · Illustration

Is 5 Days enough for Japan?

Five days is enough for a first taste of Japan built around three places, and not enough for the country as a whole. It suits a traveler who wants to see a huge modern capital, then a city where old traditions are still part of daily life, without spending the trip packing and unpacking.

Tokyo sits on Tokyo Bay, in the Kanto region on Honshu, and it is the most populous metropolitan area in the world. That scale shapes the first two days.

You cannot see it all, so you choose a few districts and let the rest go by from the train window. Ginza, with its luxury shops and high-end restaurants, shows one face of the city. Roppongi and Akasaka show another, with evening dining and a more polished mood.

Kyoto is a different rhythm. Its cultural heritage has developed over the past 1,200 years, and the city was Japan’s capital and the emperor’s residence for over a thousand years. Machiya townhouses, the Gion Matsuri festival and the hanamachi districts where geishas live and work are all part of that story. You will not exhaust it in a day, but one well-chosen day gives you its tone.

Nara comes last because it works as a gentle counterweight. The city lies south of Kyoto and east of Osaka, and it is reached by train from both. Its park is home to tame deer that you can feed with crackers sold along the roadside, a scene that makes a good final memory for adults and children alike.

What the route leaves for another trip is a long list. Hokkaido and its winter sports, Okinawa and its sea, Hiroshima, Kyushu, Shikoku, the hot-spring towns and the mountain areas all need their own days.

Osaka appears here only as a gateway, even though it has its own train network and its own food culture. If you are tempted to add a fourth city, resist it. Five days spread over three places leaves room for a long lunch, a wrong turn and an evening that has no plan.

A few habits will make the days smoother. Shoes come off at the entrance of many buildings, and in a ryokan (a traditional inn) slippers come off again on tatami mats. Smoking while walking on the street is prohibited and can bring a fine, so smokers look for the designated outdoor zones. And Japanese trains have a reputation for being on time, so you can plan the moves of this itinerary to the minute.

The itinerary stage by stage

Days 1 and 2: Tokyo

Spend the first day in Ginza and Nihonbashi, both in Tokyo. Ginza is an upscale downtown area, with department stores, luxury shops and high-end restaurants, and it rewards a slow walk even if you buy nothing. Window displays change constantly, and the side streets hide small counters serving sushi, tempura and coffee. Nihonbashi, next door, has an older commercial feel and suits a pause between shopping streets.

On the second day, head to Roppongi and Akasaka. Both are districts of Tokyo, and from Shibuya Station you reach them in about 10 minutes by train. Roppongi is where galleries, museums and late dinners gather, while Akasaka feels more reserved, with restaurants tucked into side streets. Add Shibuya itself for its crossing and its crowds of strollers, and you have seen three very different faces of the capital.

Sleep in the center of Tokyo, near a station on one of the lines run by Japan Railways, Tokyo Metro or the Toei Subway. Staying near a major station makes the move to Kyoto on day three simple to plan. Use these two days to learn the system: tap an IC card at the gate, follow the colored line codes, and let the trains carry you from district to district.

Day 3: Tokyo to Kyoto

The third day is mostly a move by rail. Kyoto Station is served by the Tokaido Shinkansen line, which connects it to major cities across Japan. Tokyo and Kyoto are both on that corridor, so the journey is one of the great train rides of the trip. Watch the landscape change from city blocks to rice fields and hills.

Kyoto Station is itself a destination for the first afternoon. The building holds a full floor of ramen restaurants, an Isetan department store, a theater and a Granvia luxury hotel. A bowl of ramen there is a fitting first meal in Kyoto, and you can walk to your lodging with the rest of the day free.

If energy remains, walk through central Kyoto in the evening. Streets of machiya townhouses, with their narrow wooden fronts, give a first taste of what the city keeps from its past. Sleep near Kyoto Station or in the central districts, since both Day 4 and the trip to Nara start from here.

Day 4: Kyoto

Devote the fourth day to central Kyoto. Nijo Castle was built in 1603 by Tokugawa Ieyasu, the first shogun of the Edo period, and it is a good way to meet the city’s political past after a day of train travel. Walk its grounds and its halls to see how the shoguns lived and received visitors, in rooms designed to impress.

From there, turn to the traditions of the city. Gion is one of the hanamachi districts where geishas live and work, and strolling its lanes gives a glimpse of that world from the street. Stop for green tea and sweets in a teahouse, or for a meal of kaiseki, a multi-course dinner of small seasonal dishes. If you visit when the Gion Matsuri is held, the whole city takes on a festival air.

Day 5: Nara and departure

The last day goes to Nara, which is accessible by train from both Kyoto and Osaka. Nara has two main stations, JR Nara Station and Kintetsu Nara Station, and either can serve as your way into the city. Nara Park lies at the foot of Mount Wakakusa, and its deer wander up to visitors who hold out the crackers sold along the roadside.

Spend the day wandering the park and the streets around it. The deer are tame and curious, and children tend to remember them more than any temple. Pair the park with a lunch in the town and a last walk before heading on.

If your flight leaves from the Kansai region, note that the closest airports to Nara are Osaka International Airport (Itami) and Kansai International Airport, both in Osaka Prefecture. Ending the trip in Nara and reaching either one by bus and train fits naturally with this route.

Getting between stops

Leg How Time
Shibuya Station to Roppongi and Akasaka By train About 10 minutes
Kansai airports (Itami or Kansai International) to Nara By bus and train About one hour and fifteen minutes

The long legs between cities go by rail. Tokyo to Kyoto runs along the Tokaido Shinkansen, since Kyoto Station is served by that line, and Kyoto to Nara is also a trip by train. Japanese public transport, including the shinkansen and regional trains, is extremely punctual, so you can set your plans by it.

Inside the cities, you will meet several operators. Tokyo has Japan Railways trains, Tokyo Metro lines and Toei Subway lines. Osaka has JR, Hankyu Railway, Hanshin Electric Railway and Keihan Railway, which matters if you pass through on the way to a Kansai airport.

The type of train changes the experience. Local trains stop at every station, rapid trains skip the smaller ones without any extra fee, and express trains serve fewer stops and may carry a supplement.

An IC card covers most of these rides in a single tap. It works on trains, buses and boats, as well as in vending machines and convenience stores. Although most regions have their own cards with different names and mascots, the cards can be used throughout Japan, so the one you pick up in Tokyo keeps working in Kyoto and Nara.

Flights and driving have little place in this route. Planes matter for getting to Japan and for leaving from a Kansai airport. On the ground, a car is a poor fit: traffic moves on the left, road signs are hard to read without Japanese, highway tolls can be very high and city traffic is often congested. Rail covers every leg of these five days.

What to book before your 5 Days in Japan

The first thing to settle is where you sleep: a base in Tokyo for the first nights and one in Kyoto for the rest. Next, get an IC card, which most issuers sell against a deposit of 500 yen. It lets you ride trains, buses and boats and pay in vending machines and convenience stores from the first day, and it works across the country.

Adapting the route

The seasons change the feel of this route more than its order. Tokyo’s figures show how much, and the numbers are those of Tokyo alone.

Tokyo, month Average high (°F) Average low (°F) Rain days Sunshine (hours)
January 49.6 34.2 4.5 193
April 66.9 49.6 9.5 179
July 85.8 72.3 10.5 151
October 71.6 58.6 10.5 129

By season

January in Tokyo is cold but bright, with plenty of sunshine and few wet days. Snow or sleet falls on a couple of days in an average January, so a coat and gloves belong in the bag. Indoor stops such as department stores, museums and ramen counters become welcome shelter, and a hot bowl of noodles at Kyoto Station suits the mood.

April brings mild air, with highs in the upper 60s and lows around 50. Showers arrive on about one day in three, so carry a compact umbrella. Layers work better than a single heavy jacket, and long walks through Gion and Nara Park fit the temperature well.

July is the heaviest month. Highs reach the mid-80s, nights stay warm and humidity is high. Rain falls on roughly a third of the days, and sunshine hours drop. Plan outdoor stops such as Nijo Castle’s grounds and Nara Park for the gaps between showers, and keep museums and the Kyoto Station building as your fallback.

October in Tokyo is comfortable for walking, with highs in the low 70s and cool evenings. It is also a wet month, with a similar number of rain days as July and the fewest hours of sunshine in the table. Pack a light rain jacket and expect gray spells between the bright ones.

Shorter, longer or slower

With less time, keep Tokyo and Kyoto and drop Nara. The two cities are linked by the Tokaido Shinkansen, so the trip stays a straight line. You lose the deer, but you gain a second evening in Kyoto for a kaiseki dinner or a walk through the lanes of Gion.

With more time, give Kyoto an extra day rather than adding a new city. The city’s history reaches back over a thousand years as the imperial capital, and there is more to see than one day allows. Another option is to add Osaka as a base, since it has its own set of railways and Nara is reached by train from there too.

For a trip with children, Nara is the day to protect. The tame deer and the crackers sold along the roadside give a hands-on stop that needs no explanation. In Tokyo, trade one of the district days for a slower one, and keep the ramen floor at Kyoto Station in mind for tired afternoons.

Good to know before you go

Money matters are simple to plan. Tap an IC card for transit and small purchases, and keep your yen for the places that need them.

Remember the habits that shape daily life: shoes off at the entrance of a ryokan, separate toilet slippers when they are provided, and no smoking on the move. Smokers should look for the designated outdoor areas, which are limited. In every season, the trains stay punctual, so the plan holds together as long as you leave a margin on the days you change cities.

Sources
  • U.S. Department of State, Japan travel information, travel and transportation (https://travel.state.gov/content/travel/en/international-travel/International-Travel-Country-Information-Pages/Japan.html), checked October 11, 2026
  • Japan National Tourism Organization, trains and buses (https://www.japan.travel/en/guide/how-to-travel-by-train-and-bus-in-japan/), checked October 11, 2026
  • Japan National Tourism Organization, traveling by rail (https://www.japan.travel/en/guide/traveling-by-rail/), checked October 11, 2026
  • Japan National Tourism Organization, manners, etiquette, shoes, bowing, chopsticks, public behavior (https://www.japan.travel/en/guide/understanding-and-mastering-japanese-manners-and-etiquette/), checked October 11, 2026
  • Japan National Tourism Organization, getting around Japan: trains, subways, buses, taxis (https://www.japan.travel/en/plan/getting-around/), checked October 11, 2026
  • Japan National Tourism Organization, IC cards, Suica, Pasmo, ICOCA, how to use (https://www.japan.travel/en/plan/ic-card/), checked October 11, 2026
  • Japan National Tourism Organization, Tokyo (https://www.japan.travel/en/destinations/kanto/tokyo/), checked October 11, 2026
  • Japan National Tourism Organization, Kyoto (https://www.japan.travel/en/destinations/kansai/kyoto/), checked October 11, 2026
  • Japan National Tourism Organization, Nara (https://www.japan.travel/en/destinations/kansai/nara/), checked October 11, 2026
  • Japan Meteorological Agency (JMA), Normal values 1991-2020, monthly (https://www.data.jma.go.jp/stats/etrn/view/nml_sfc_ym.php?prec_no=44&block_no=47662), station Tokyo, elevation 25 m, checked October 11, 2026
  • Plan de the (duree choisie by the redaction)

To plan your stay

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